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Research at St Andrews

Carlos Penedo

Person

  1. E-pub ahead of print

    A structural intermediate pre-organizes the add adenine riboswitch for ligand recognition

    St-Pierre, P., Shaw, E. S., Jacques, S., Dalgarno, P. A., Perez Gonzalez, C., Picard-Jean, F., Penedo, C. & Lafontaine, D. A., 8 May 2021, (E-pub ahead of print) In: Nucleic Acids Research. Advance Article, 14 p.

    Research output: Contribution to journalArticlepeer-review

  2. Published

    An integrated perspective on RNA aptamer ligand-recognition models: clearing muddy waters

    McCluskey, K. & Penedo, J. C., 14 Mar 2017, In: Physical Chemistry Chemical Physics. 19, 10, p. 6921-6932 11 p.

    Research output: Contribution to journalReview articlepeer-review

  3. Published

    Asymmetric base-pair opening drives helicase unwinding dynamics

    Colizzi, F., Perez-Gonzalez, C., Fritzen, R., Levy, Y., White, M. F., Penedo, J. C. & Bussi, G., 5 Nov 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 45, p. 22471-22477 7 p.

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach

    Morten, M. J., Peregrina, J. R., Figueira-Gonzalez, M., Ackermann, K., Bode, B. E., White, M. F. & Penedo, C., 15 Dec 2015, In: Nucleic Acids Research. 43, 22, p. 10907-10924 18 p.

    Research output: Contribution to journalArticlepeer-review

  5. Published

    DNA binding and unwinding by Hel308 helicase requires dual functions of a winged helix domain

    Northall, S. J., Buckley, R., Jones, N., Penedo-Esteiro, J. C., Soultanas, P. & Bolt, E., Sep 2017, In: DNA Repair. 57, p. 125-132 7 p.

    Research output: Contribution to journalArticlepeer-review

  6. Published

    Fluorescence-based strategies to investigate the structure and dynamics of aptamer-ligand complexes

    Perez Gonzalez, D. C., Lafontaine, D. A. & Penedo-Esteiro, J. C., 3 Aug 2016, In: Frontiers in Chemistry. 4, 33.

    Research output: Contribution to journalReview articlepeer-review

  7. Published

    Functional 3D architecture in an intrinsically disordered E3 ligase domain facilitates ubiquitin transfer

    Murphy, P., Xu, Y., Rouse, S. L., Jaffray, E. G., Plechanovova, A., Matthews, S. J., Penedo, C. & Hay, R. T., 30 Jul 2020, In: Nature Communications. 11, 13 p., 3807.

    Research output: Contribution to journalArticlepeer-review

  8. Published

    High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein

    Morten, M. J., Gamsjaeger, R., Cubeddu, L., Kariawasam, R., Peregrina, J. R., Penedo-Esteiro, J. C. & White, M. F., Mar 2017, In: Extremophiles. 21, 2, p. 369-379 11 p.

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Mechanism of DNA loading by the DNA repair helicase XPD

    Constantinescu-Aruxandei, D., Petrovic-Stojanovska, B., Penedo, C., White, M. F. & Naismith, J. H., 7 Apr 2016, In: Nucleic Acids Research. 44, 6, p. 2806-2815 10 p.

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Morphology-specific inhibition of β-amyloid aggregates by 17β-hydroxysteroid dehydrogenase type 10

    Aitken, L., Quinn, S. D., Perez-Gonzalez, D. C., Samuel, I. D. W., Penedo-Esteiro, J. C. & Gunn-Moore, F. J., 2 Jun 2016, In: ChemBioChem. 17, 11, p. 1029-1037

    Research output: Contribution to journalArticlepeer-review

  11. Published

    PCNA and XPF cooperate to distort DNA substrates

    Hutton, R. D., Craggs, T. D., White, M. F. & Penedo, C., Mar 2010, In: Nucleic Acids Research. 38, 5, p. 1664-1675 12 p.

    Research output: Contribution to journalArticlepeer-review

  12. Published

    PCNA stimulates catalysis by structure-specific nucleases using two distinct mechanisms: substrate targeting and catalytic step

    Hutton, R. D., Roberts, J. A., Penedo, C. & White, M. F., Dec 2008, In: Nucleic Acids Research. 36, 21, p. 6720-6727 8 p.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Real-time observation of conformational switching in single conjugated polymer chains

    Tenopala Carmona, F., Fronk, S., Bazan, G. C., Samuel, I. D. W. & Penedo-Esteiro, J. C., 16 Feb 2018, In: Science Advances. 4, 2, p. 1-12 12 p., eaao5786.

    Research output: Contribution to journalArticlepeer-review

  14. E-pub ahead of print

    Single molecule spectroscopy of polyfluorene chains reveals β-phase content and phase reversibility in organic solvents

    Brenlla, A., Tenopala-Carmona, F., Kanibolotsky, A. L., Skabara, P. J., Samuel, I. D. W. & Penedo-Esteiro, J. C., 9 Oct 2019, (E-pub ahead of print) In: Matter. In press

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates

    Craggs, T. D., Brenlla, A., Hutton, R. D., White, M. F. & Penedo, C., Feb 2014, In: Nucleic Acids Research. 42, 3, p. 1857-1872

    Research output: Contribution to journalArticlepeer-review

  16. Published

    Single-molecule chemical denaturation of riboswitches

    Dalgarno, P. A., Bordello, J., Morris, R., St-Pierre, P., Dubé, A., Samuel, I. D. W., Lafontaine, D. & Penedo, C., Feb 2013, In: Nucleic Acids Research. 41, 7, p. 4253-4265

    Research output: Contribution to journalArticlepeer-review

  17. Published

    The influence of various regions of the FOXP2 sequence on its structure and DNA binding function

    Thulo, M., Rabie, M. A., Pahad, N., Donald, H. L., Blane, A. A., Perumal, C. M., Penedo, C. & Fanucchi, S., Jan 2021, In: Bioscience Reports. 41, 1, 13 p., BSR20202128.

    Research output: Contribution to journalArticlepeer-review

  18. Published

    The phosphorylation of Hsp20 enhances its association with amyloid-β to increase protection against neuronal cell death

    Cameron, R. T., Quinn, S. D., Cairns, L. S., MacLeod, R., Samuel, I. D. W., Smith, B. O., Penedo, C. & Baillie, G. S., Jul 2014, In: Molecular and Cellular Neuroscience. 61, p. 46-55 10 p.

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Ubiquitin transfer by a RING E3 ligase occurs from a closed E2~ubiquitin conformation

    Branigan, E., Penedo, C. & Hay, R. T., 5 Jun 2020, In: Nature Communications. 11, 11 p., 2846.

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Unprecedented tunability of riboswitch structure and regulatory function by sub-millimolar variations in physiological Mg2+

    McCluskey, K. A., Boudreault, J., St-Pierre, P., Perez Gonzalez, C., Chauvier, A., Rizzi, A., Beauregard, P. B., Lafontaine, D. A. & Penedo-Esteiro, J. C., 9 Jul 2019, In: Nucleic Acids Research. 47, 12, p. 6478–6487 10 p.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Unveiling the multi-step solubilization mechanism of sub-micron size vesicles by detergents

    Dalgarno, P. A., Juan-Colás, J., Hedley, G. J., Piñeiro, L., Novo, M., Perez-Gonzalez, C., Samuel, I. D. W., Leake, M., Johnson, S., Al-Soufi, W., Penedo-Esteiro, J. C. & Quinn, S. D., 9 Sep 2019, In: Scientific Reports. 9, 10 p., 12897.

    Research output: Contribution to journalArticlepeer-review

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