Skip to content

Research at St Andrews

Carlos Penedo

Person

  1. 2019
  2. E-pub ahead of print

    Single molecule spectroscopy of polyfluorene chains reveals β-phase content and phase reversibility in organic solvents

    Brenlla, A., Tenopala-Carmona, F., Kanibolotsky, A. L., Skabara, P. J., Samuel, I. D. W. & Penedo-Esteiro, J. C., 9 Oct 2019, In : Matter. In press

    Research output: Contribution to journalArticle

  3. Published

    Twin-FRET: A New Molecular Ruler for Biomolecules

    Jana, S., Diez-Castellnou, M., Kay, E. R. & Penedo, C., 15 Feb 2019, In : Biophysical Journal. 116, 3, p. 565A-565A 1 p.

    Research output: Contribution to journalAbstract

  4. Published

    Unprecedented tunability of riboswitch structure and regulatory function by sub-millimolar variations in physiological Mg2+

    McCluskey, K. A., Boudreault, J., St-Pierre, P., Perez Gonzalez, C., Chauvier, A., Rizzi, A., Beauregard, P. B., Lafontaine, D. A. & Penedo-Esteiro, J. C., 9 Jul 2019, In : Nucleic Acids Research. 47, 12, p. 6478–6487 10 p.

    Research output: Contribution to journalArticle

  5. Published

    Unveiling the multi-step solubilization mechanism of sub-micron size vesicles by detergents

    Dalgarno, P. A., Juan-Colás, J., Hedley, G. J., Piñeiro, L., Novo, M., Perez-Gonzalez, C., Samuel, I. D. W., Leake, M., Johnson, S., Al-Soufi, W., Penedo-Esteiro, J. C. & Quinn, S. D., 9 Sep 2019, In : Scientific Reports. 9, 10 p., 12897.

    Research output: Contribution to journalArticle

  6. 2018
  7. Published

    Real-time observation of conformational switching in single conjugated polymer chains

    Tenopala Carmona, F., Fronk, S., Bazan, G. C., Samuel, I. D. W. & Penedo-Esteiro, J. C., 16 Feb 2018, In : Science Advances. 4, 2, 13 p., eaao5786.

    Research output: Contribution to journalArticle

  8. 2017
  9. Published

    An integrated perspective on RNA aptamer ligand-recognition models: clearing muddy waters

    McCluskey, K. & Penedo, J. C., 14 Mar 2017, In : Physical Chemistry Chemical Physics. 19, 10, p. 6921-6932 11 p.

    Research output: Contribution to journalReview article

  10. Published

    DNA binding and unwinding by Hel308 helicase requires dual functions of a winged helix domain

    Northall, S. J., Buckley, R., Jones, N., Penedo-Esteiro, J. C., Soultanas, P. & Bolt, E., Sep 2017, In : DNA Repair. 57, p. 125-132 7 p.

    Research output: Contribution to journalArticle

  11. Published

    High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein

    Morten, M. J., Gamsjaeger, R., Cubeddu, L., Kariawasam, R., Peregrina, J. R., Penedo-Esteiro, J. C. & White, M. F., Mar 2017, In : Extremophiles. 21, 2, p. 369-379 11 p.

    Research output: Contribution to journalArticle

  12. Published

    Transcriptional dynamics

    Lafontaine, D. A. & Penedo-Esteiro, J. C., 1 May 2017, In : Methods. 120, p. 1-2 2 p.

    Research output: Contribution to journalEditorial

  13. 2016
  14. Published

    Biophysical approaches to gene regulation by riboswitches: Biophysics of Infection

    Perez Gonzalez, D. C., Grondin, J. P., Lafontaine, D. A. & Penedo-Esteiro, J. C., 19 May 2016, Advances in Experimental Medicine and Biology: Biophysics of Infection. Leake, M. C. (ed.). Switzerland: Springer, Vol. 915. p. 157-190

    Research output: Chapter in Book/Report/Conference proceedingChapter

  15. Published

    Fluorescence-based strategies to investigate the structure and dynamics of aptamer-ligand complexes

    Perez Gonzalez, D. C., Lafontaine, D. A. & Penedo-Esteiro, J. C., 3 Aug 2016, In : Frontiers in Chemistry. 4, 33.

    Research output: Contribution to journalReview article

  16. Published

    Mechanism of DNA loading by the DNA repair helicase XPD

    Constantinescu-Aruxandei, D., Petrovic-Stojanovska, B., Penedo, C., White, M. F. & Naismith, J. H., 7 Apr 2016, In : Nucleic Acids Research. 44, 6, p. 2806-2815 10 p.

    Research output: Contribution to journalArticle

  17. Published

    Morphology-specific inhibition of β-amyloid aggregates by 17β-hydroxysteroid dehydrogenase type 10

    Aitken, L., Quinn, S. D., Perez-Gonzalez, D. C., Samuel, I. D. W., Penedo-Esteiro, J. C. & Gunn-Moore, F. J., 2 Jun 2016, In : ChemBioChem. 17, 11, p. 1029-1037

    Research output: Contribution to journalArticle

  18. 2015
  19. Published

    Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach

    Morten, M. J., Peregrina, J. R., Figueira-Gonzalez, M., Ackermann, K., Bode, B. E., White, M. F. & Penedo, C., 15 Dec 2015, In : Nucleic Acids Research. 43, 22, p. 10907-10924 18 p.

    Research output: Contribution to journalArticle

  20. Published

    Functional studies of DNA-protein interactions using FRET techniques

    Blouin, S., Craggs, T. D., Lafontaine, D. A. & Penedo, C., 1 Oct 2015, In : Methods in Molecular Biology. 1334, p. 115-141

    Research output: Contribution to journalArticle

  21. Published

    Single-Molecule Strategies for DNA and RNA Diagnostics

    Perez Gonzalez, D. C. & Penedo, C., 15 Jun 2015, RNA and DNA Diagnostics. Erdmann, V. A., Jurga, S. & Barciszewski, J. (eds.). Springer, p. 297-332 (RNA Technologies).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  22. Published

    Single-molecule approaches for the characterization of riboswitch folding mechanisms

    Penedo, C., Boudreault, J., Perez Gonzalez, D. C. & Lafontaine, D. A., 1 Oct 2015, In : Methods in molecular biology (Clifton, N.J.). 1334, p. 101-107

    Research output: Contribution to journalArticle

  23. Published

    Towards ratiometric sensing of amyloid fibrils in vitro

    Freire, S., Rodriguez-Prieto, F., Rios-Rodriguez, M. C., Penedo, C., Al-Soufi, W. & Novo, M., 16 Feb 2015, In : Chemistry - A European Journal. 21, 8, p. 3425-3434

    Research output: Contribution to journalArticle

  24. 2014
  25. Published

    Fluorescence tools to investigate riboswitch structural dynamics

    Shaw, E. S., McCluskey, K., Lafontaine, D. A. & Penedo, C., 1 Oct 2014, In : Biochimica et Biophysica Acta - Gene regulatory mechanisms. 1839, 10

    Research output: Contribution to journalReview article

  26. Published

    Real-time probing of β-amyloid self-assembly and inhibition using fluorescence self-quenching between neighbouring dyes

    Quinn, S. D., Dalgarno, P. A., Cameron, R. T., Hedley, G. J., Hacker, C., Lucocq, J. M., Samuel, I. D. W. & Penedo, C., Jan 2014, In : Molecular BioSystems. 10, 1, p. 34-44 11 p.

    Research output: Contribution to journalArticle

  27. Published

    Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates

    Craggs, T. D., Brenlla, A., Hutton, R. D., White, M. F. & Penedo, C., Feb 2014, In : Nucleic Acids Research. 42, 3, p. 1857-1872

    Research output: Contribution to journalArticle

  28. Published

    The phosphorylation of Hsp20 enhances its association with amyloid-β to increase protection against neuronal cell death

    Cameron, R. T., Quinn, S. D., Cairns, L. S., MacLeod, R., Samuel, I. D. W., Smith, B. O., Penedo, C. & Baillie, G. S., Jul 2014, In : Molecular and Cellular Neuroscience. 61, p. 46-55 10 p.

    Research output: Contribution to journalArticle

  29. Published

    Using sm-FRET and denaturants to reveal folding landscapes

    Shaw, E. S., St-Pierre, P., McCluskey, K., Lafontaine, D. A. & Penedo, C., 2014, In : Methods In Enzymology. 549, p. 313-341

    Research output: Contribution to journalReview article

  30. 2013
  31. Forthcoming

    Single molecule Fluorescence of Nucleic Acids

    McCluskey, K., Shaw, E. S., Lafontaine, D. & Penedo, C., 2013, (Accepted/In press) Methods in Molecular Biology: Fluorescence microscopy and spectroscopy. Vol. 1076.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  32. Published

    Single-molecule chemical denaturation of riboswitches

    Dalgarno, P. A., Bordello, J., Morris, R., St-Pierre, P., Dubé, A., Samuel, I. D. W., Lafontaine, D. & Penedo, C., Feb 2013, In : Nucleic Acids Research. 41, 7, p. 4253-4265

    Research output: Contribution to journalArticle

  33. Published

    Solution-Based Single Molecule Imaging of Surface-Immobilized Conjugated Polymers

    Dalgarno, P. A., Traina, C. A., Penedo, C., Bazan, G. & Samuel, I. D. W., 2013, In : Journal of the American Chemical Society. 135, 19, 7187-7193.

    Research output: Contribution to journalArticle

  34. 2012
  35. Forthcoming

    Folding of the SAM-I riboswitch: A tale with a twist

    Eschbach, SH., St-Pierre, P., Penedo, C. & Lafontaine, DA., Apr 2012, (Accepted/In press) In : RNA Biology. 9, 2

    Research output: Contribution to journalReview article

  36. 2011
  37. Published

    Constitutive Regulatory Activity of an Evolutionarily Excluded Riboswitch Variant

    Tremblay, R., Lemay, J-F., Blouin, S., Mulhbacher, J., Bonneau, E., Legault, P., Dupont, P., Penedo, C. & Lafontaine, D. A., 5 Aug 2011, In : Journal of Biological Chemistry. 286, 31, p. 27406-27415 10 p.

    Research output: Contribution to journalArticle

  38. Published

    Molecular insights into the ligand-controlled organization of SAM-I riboswitch

    Heppell, B., Blouin, S., Dussault, A. M., Muhlbacher, J., Ennifar, J., Penedo, C. & Lafontaine, D., Jun 2011, In : Nature Chemical Biology. 7, 6, p. 384-392

    Research output: Contribution to journalArticle

  39. 2010
  40. Published

    PCNA and XPF cooperate to distort DNA substrates

    Hutton, R. D., Craggs, T. D., White, M. F. & Penedo, C., Mar 2010, In : Nucleic Acids Research. 38, 5, p. 1664-1675 12 p.

    Research output: Contribution to journalArticle

  41. 2009
  42. Published

    Application of fluorescence measurements for characterization of riboswitch-ligand interactions

    Penedo-Esteiro, J. C., Heppell, B., Mulbacher, J. & Lafontaine, D., 2009, Methods in Molecular Biology. New Jersey: Humana Press, Vol. 540.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  43. Published

    Functional studies of DNA-protein interactions using FRET techniques

    Penedo-Esteiro, J. C., Blouin, S. & Lafontaine, D., 2009, Methods in Molecular Biology. Moss, T. & Leblanc, B. (eds.). New Jersey: Humana Press, Vol. 543.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  44. Published

    Molecular basis of RNA-mediated gene regulation on the adenine riboswitch by single-molecule approaches

    Penedo-Esteiro, J. C., Lemay, JF., Mulbacher, J. & Lafontaine, D., 2009, Methods in Molecular Biology. Serganov, A. (ed.). New Jersey: Humana Press, Vol. 540.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  45. Published

    Riboswitches: Ancient and Promising Genetic Regulators

    Blouin, S., Mulhbacher, J., Penedo-Esteiro, J. C. & Lafontaine, D. A., 13 Feb 2009, In : ChemBioChem. 10, 3, p. 400-416 17 p.

    Research output: Contribution to journalReview article

  46. 2008
  47. Published

    PCNA stimulates catalysis by structure-specific nucleases using two distinct mechanisms: substrate targeting and catalytic step

    Hutton, R. D., Roberts, J. A., Penedo, C. & White, M. F., Dec 2008, In : Nucleic Acids Research. 36, 21, p. 6720-6727 8 p.

    Research output: Contribution to journalArticle

Top