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Research at St Andrews

Ian Alistair Johnston

Person

  1. 2019
  2. Published

    Demonstration of the use of environmental DNA for the non-invasive genotyping of a bivalve mollusk, the European flat oyster (Ostrea edulis)

    Holman, L., Hollenbeck, C. M., Ashton, T. J. & Johnston, I. A., 19 Nov 2019, In : Frontiers in Genetics. 10, 7 p., 1159.

    Research output: Contribution to journalArticle

  3. Published

    Influence of feed ration size on somatic and muscle growth in landlocked dwarf and farmed Atlantic salmon Salmo salar

    Andersen, Ø., Vieira, V., Dessen, J-E. & Johnston, I. A., Apr 2019, In : Journal of Fish Biology. 94, 4, p. 614-620 7 p.

    Research output: Contribution to journalArticle

  4. 2018
  5. Published

    A collaborative European approach to accelerating translational marine science

    Brennecke, P., Ferrante, M., Johnston, I. A. & Smith, D., 5 Jul 2018, In : Journal of Marine Science and Engineering. 6, 3, 12 p., 81.

    Research output: Contribution to journalArticle

  6. E-pub ahead of print
  7. Published

    Genomic tools and selective breeding in molluscs

    Hollenbeck, C. M. & Johnston, I. A., 18 Jul 2018, In : Frontiers in Genetics. 9, 15 p., 253.

    Research output: Contribution to journalReview article

  8. 2017
  9. Published

    A workflow used to design low density SNP panels for parentage assignment and traceability in aquaculture species and its validation in Atlantic salmon

    Holman, L. E., Garcia de la Serrana, D., Onoufriou, A., Hillestad, B. & Johnston, I. A., 1 Jul 2017, In : Aquaculture. 476, p. 59-64 6 p.

    Research output: Contribution to journalArticle

  10. Published

    Divergent regulation of insulin-like growth factor binding protein genes in cultured Atlantic salmon myotubes under different models of catabolism and anabolism

    Garcia de la Serrana, D., Jofre, E. N., Martin, S. A. M., Johnston, I. A. & Macqueen, D. J., 1 Jun 2017, In : General and Comparative Endocrinology. 247, p. 53-65 13 p.

    Research output: Contribution to journalArticle

  11. 2016
  12. Published

    Comparison of the transcriptional responses of skeletal muscle and bone to a flooding dose of leucine in the gilthead sea bream (Sparus aurata)

    Garcia de la Serrana, D., Mareco, E. A., Vieira, V. L. A., Power, D. M. & Johnston, I. A., Sep 2016, In : Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology. 199, p. 50-57 7 p.

    Research output: Contribution to journalArticle

  13. 2015
  14. Published

    Characterisation and expression analysis of cathepsins and ubiquitin-proteasome genes in gilthead sea bream (Sparus aurata) skeletal muscle

    Salmerón, C., Navarro, I., Johnston, I. A., Gutiérrez, J. & Capilla, E., 15 Apr 2015, In : BMC Research Notes. 8, 149

    Research output: Contribution to journalArticle

  15. Published

    Characterization of the transcriptome of fast and slow muscle myotomal fibres in the pacu (Piaractus mesopotamicus)

    Mareco, E. A., Garcia de la Serrana Castillo, D., Johnston, I. A. & Dal-Pai-Silva, M., 14 Mar 2015, In : BMC Genomics. 16, 13 p., 182.

    Research output: Contribution to journalArticle

  16. Published
  17. 2014
  18. Published
  19. Published

    Cardiac myoglobin deficit has evolved repeatedly in teleost fishes

    Macqueen, D. J., Garcia de la Serrana Castillo, D. & Johnston, I. A., 11 Jun 2014, In : Biology Letters. 10, 6, 5 p., 20140225.

    Research output: Contribution to journalArticle

  20. Published

    Characterisation and expression of myogenesis regulatory factors during in vitro myoblast development and in vivo fasting in the gilthead sea bream (Sparus aurata)

    Garcia de la Serrana, D., Codina, M., Capilla, E., Jimenez-Amilburu, V., Navarro, I., Du, S-J., Johnston, I. A. & Gutierrez, J., Jan 2014, In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 167, p. 90-99 10 p.

    Research output: Contribution to journalArticle

  21. Published

    Muscle fibre size optimisation provides flexibility for energy budgeting in calorie-restricted coho salmon transgenic for growth hormone

    Johnston, I. A., Garcia de la Serrana Castillo, D. & Devlin, R. H., 1 Oct 2014, In : Journal of Experimental Biology. 217, 19, p. 3392-3395 4 p.

    Research output: Contribution to journalArticle

  22. Published

    Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality

    Mommens, M., Fernandes, J. M. O., Tollefsen, K. E., Johnston, I. A. & Babiak, I., 30 Sep 2014, In : BMC Genomics. 15, 13 p., 829.

    Research output: Contribution to journalArticle

  23. Published

    Systematic variation in the pattern of gene paralog retention between the teleost superorders Ostariophysi and Acanthopterygii

    Garcia de la Serrana, D., Mareco, E. A. & Johnston, I. A., Apr 2014, In : Genome Biology and Evolution. 6, 4, p. 981-7 7 p.

    Research output: Contribution to journalArticle

  24. 2013
  25. Published

    Characterisation and expression of calpain family members in relation to nutritional status, diet composition and flesh texture in gilthead sea bream (Sparus aurata)

    Salmeron, C., Garcia de la Serrana Castillo, D., Jimenez-Amilburu, V., Fontanillas, R., Navarro, I., Johnston, I. A., Gutierrez, J. & Capilla, E., 25 Sep 2013, In : PLoS ONE. 8, 9, 15 p., e75349.

    Research output: Contribution to journalArticle

  26. Published

    Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes

    MacQueen, D. J., Garcia de la Serrana Castillo, D. & Johnston, I. A., May 2013, In : Molecular Biology and Evolution. 30, 5, p. 1060-1076

    Research output: Contribution to journalArticle

  27. Published

    Expression of heat shock protein (Hsp90) paralogues is regulated by amino acids in skeletal muscle of Atlantic salmon

    Garcia de la Serrana Castillo, D. & Johnston, I. A., 6 Sep 2013, In : PLoS One. 8, 9, e74295.

    Research output: Contribution to journalArticle

  28. Published

    What determines growth potential and juvenile quality of farmed fish species?

    Valente, L. M. P., Moutou, K. A., Conceicao, L. E. C., Engrola, S., Fernandes, J. M. O. & Johnston, I. A., May 2013, In : Reviews in Aquaculture. 5, Supp 1, p. S168-S193 26 p.

    Research output: Contribution to journalReview article

  29. 2012
  30. Published
  31. Published

    Development temperature has persistent effects on muscle growth responses in gilthead sea bream

    Garcia de la Serrana Castillo, D., Vieira-Johnston, V. L. A., Andree, K. B., Darias, M., Estévez, A., Gisbert, E. & Johnston, I. A., 17 Dec 2012, In : PLoS One. 7, 12, e51884.

    Research output: Contribution to journalArticle

  32. Published

    Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing

    Garcia de la Serrana Castillo, D., Estevez, A., Andree, K. & Johnston, I. A., 11 May 2012, In : BMC Genomics. 13, 17 p., 181.

    Research output: Contribution to journalArticle

  33. Published

    Postprandial expression of growth-related genes in Atlantic salmon (Salmo salar L.) juveniles fasted for 1 week and fed a single meal to satiation

    Valente, L. M. P., Bower, N. I. & Johnston, I. A., 28 Dec 2012, In : British Journal of Nutrition. 108, 12, p. 2148-2157 10 p.

    Research output: Contribution to journalArticle

  34. Published
  35. Published

    Universal scaling rules predict evolutionary patterns of myogenesis in species with indeterminate growth

    Johnston, I. A., Kristjansson, B. K., Paxton, C. G. M., Vieira-Johnston, V. L. A., MacQueen, D. J. & Bell, M. A., 7 Jun 2012, In : Proceedings of the Royal Society B: Biological Sciences. 279, 1736, p. 2255-2261 7 p.

    Research output: Contribution to journalArticle

  36. 2011
  37. Published

    Growth and the regulation of myotomal muscle mass in teleost fish

    Johnston, I. A., Bower, N. I. & Macqueen, D. J., May 2011, In : Journal of Experimental Biology. 214, 10, p. 1617-1628 12 p.

    Research output: Contribution to journalReview article

  38. Published
  39. Published

    The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR-pathway gene expression

    MacQueen, D. J., Kristjánsson, B. K., Paxton, C. G. M., Vieira-Johnston, V. L. A. & Johnston, I. A., 2011, In : Molecular Ecology. 20, 15, p. 3167-3184 17 p.

    Research output: Contribution to journalArticle

  40. 2010
  41. Published

    A Newly Classified Vertebrate Calpain Protease, Directly Ancestral to CAPN1 and 2, Episodically Evolved a Restricted Physiological Function in Placental Mammals

    Macqueen, D. J., Delbridge, M. L., Manthri, S. & Johnston, I. A., Aug 2010, In : Molecular Biology and Evolution. 27, 8, p. 1886-1902 17 p.

    Research output: Contribution to journalArticle

  42. Published

    A Novel Tensile Test Method to Assess Texture and Gaping in Salmon Fillets

    Ashton, T. J., Michie, I. & Johnston, I. A., May 2010, In : Journal of Food Science. 75, 4, p. 182-190 9 p.

    Research output: Contribution to journalArticle

  43. Published
  44. Published

    Characterisation of capn1, capn2-like, capn3 and capn11 genes in Atlantic halibut (Hippoglossus hippoglossus L.): Transcriptional regulation across tissues and in skeletal muscle at distinct nutritional states

    Macqueen, D. J., Meischke, L., Manthri, S., Anwar, A., Solberg, C. & Johnston, I. A., 15 Mar 2010, In : Gene. 453, 1-2, p. 45-58 14 p.

    Research output: Contribution to journalArticle

  45. Published

    Discovery and characterization of nutritionally regulated genes associated with muscle growth in Atlantic salmon

    Bower, N. I. & Johnston, I. A., 29 Sep 2010, In : Physiological Genomics. 42A, 2, p. 114-130 17 p.

    Research output: Contribution to journalArticle

  46. Published
  47. Published

    Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis

    Macqueen, D. J., Bower, N. I. & Johnston, I. A., 1 Oct 2010, In : Biochemical and Biophysical Research Communications. 400, 4, p. 599-605 7 p.

    Research output: Contribution to journalArticle

  48. Published

    Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism

    Macqueen, D. J., Kristjansson, B. K. & Johnston, I. A., Jun 2010, In : Physiological Genomics. 42, 1, p. 134-148 15 p.

    Research output: Contribution to journalArticle

  49. Published
  50. Published
  51. 2009
  52. Published

    Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome-wide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes.

    Johnston, I. A., Lee, H-T., MacQueen, D. J., Paranthaman, K., Kawashima, C., Kinghorn, J. R. & Dalmay, T., 15 Jun 2009, In : Journal of Experimental Biology. 212, p. 1781-1793 13 p.

    Research output: Contribution to journalArticle

  53. Published

    Evolution of the multifaceted eukaryotic akirin gene family

    Macqueen, D. J. & Johnston, I. A., 6 Feb 2009, In : BMC Evolutionary Biology. 9, 20 p., 34.

    Research output: Contribution to journalArticle

  54. Published
  55. Published

    Gene expression analyses of essential catch factors in the smooth and striated adductor muscles of larval, juvenile and adult great scallop (Pecten maximus)

    Andersen, O., Torgersen, J. S., Pagander, H. H., Magnesen, T. & Johnston, I. A., Sep 2009, In : Journal of muscle research and cell motility. 30, 5-6, p. 233-242 10 p.

    Research output: Contribution to journalArticle

  56. Published

    Phasing of muscle gene expression with fasting-induced recovery growth in Atlantic salmon

    Bower, N. I., Taylor, R. G. & Johnston, I. A., 24 Aug 2009, In : Frontiers in Zoology. 6, 13 p., 18.

    Research output: Contribution to journalArticle

  57. Published

    Selection of reference genes for expression studies with fish myogenic cell cultures

    Bower, N. I. & Johnston, I. A., 10 Aug 2009, In : BMC Molecular Biology. 10, p. - 11 p., 80.

    Research output: Contribution to journalArticle

  58. 2008
  59. Published
  60. Published
  61. Published

    Effect of natural selection on the duplicated lysyl oxidase gene in Atlantic salmon.

    Johnston, I. A. & Johnston, I. A., Nov 2008, In : Genetica. 134, p. 325-334 10 p.

    Research output: Contribution to journalArticle

  62. Published

    Evolution of follistatin in teleosts revealed through phylogenetic, genomic and expression analyses

    Johnston, I. A. & MacQueen, D. J., Jan 2008, In : Development Genes and Evolution. 218, 1, p. 1-14 14 p.

    Research output: Contribution to journalArticle

  63. Published

    Genomic, evolutionary, and expression analyses of cee, an ancient gene involved in normal growth and development.

    Fernandes, J., Macqueen, D. J., Lee, H-T. & Johnston, I. A., Apr 2008, In : Genomics. 91, 4, p. 315-325 11 p.

    Research output: Contribution to journalArticle

  64. Published

    Intra-specific variation in muscle fibre phenotype

    Johnston, I. A., Amaral, I. P. G. & Vleira, V. L. A., Jul 2008, In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 150, 1 p.

    Research output: Contribution to journalArticle

  65. Published

    Molecular biotechnology of development and growth in fish muscle

    Johnston, I. A., MacQueen, D. J. & Watabe, S., 2008, Fisheries for Global Welfare and Environment: Memorial book of the 5th World Fisheries Congress 2008. Tsukamoto, K., Kawamura, T., Takeuchi, T., Beard, Jr, T. D. & Kaiser, M. J. (eds.). Terrapub, p. 241-262

    Research output: Chapter in Book/Report/Conference proceedingChapter

  66. Published
  67. Published
  68. Published

    Switching to fast growth: the insulin-like growth factor (IGF) system in skeletal muscle of Atlantic salmon.

    Bower, N. I., Li, X., Taylor, R. & Johnston, I. A., 15 Dec 2008, In : Journal of Experimental Biology. 211, 24, p. 3859-3870 12 p.

    Research output: Contribution to journalArticle

  69. Published
  70. Published

    Temperature until the ‘eyed stage’ of embryogenesis programmes the growth trajectory and muscle phenotype of adult Atlantic salmon.

    Johnston, I. A., Robb, D. H. F., Olsen, T., Melstveit, L., Paxton, C. G. M. & Johnston, I. A., 23 Jun 2008, In : Biology Letters. 4, p. 294-298 5 p.

    Research output: Contribution to journalArticle

  71. Published

    The biological basis of variability in the texture of fish flesh

    Johnston, I. A., 2008, Improving Seafood Products for the Consumer. Børresen, T. (ed.). CRC Press, p. 465-489

    Research output: Chapter in Book/Report/Conference proceedingChapter

  72. 2007
  73. Published

    Biochemical and structural factors contributing to seasonal variation in the texture of farmed halibut (Hippoglossus hippoglossus L.) flesh.

    Johnston, I. A., Solberg, C., Sirnes, E. & Johnston, I. A., 11 Jul 2007, In : Journal of Agricultural and Food Chemistry. 55, p. 5803-5808 6 p.

    Research output: Contribution to journalArticle

  74. Published
  75. Published
  76. Published
  77. Published
  78. Published
  79. Published

    Differential regulation of multiple alternatively spliced transcripts of MyoD

    Fernandes, JMO., Kinghorn, J. R. & Johnston, I. A., 15 Apr 2007, In : Gene. 391, 1-2, p. 178-185 8 p.

    Research output: Contribution to journalArticle

  80. Published

    Fast growth was not associated with an increased incidence of soft flesh and gaping in two strains of Atlantic salmon (Salmo salar) grown under different environmental conditions.

    Johnston, I. A., Li, X. J., Bickerdike, R., Dingwall, A., Nickell, D., Alderson, R. & Campbell, P., 1 May 2007, In : Aquaculture. 265, p. 148-155 8 p.

    Research output: Contribution to journalArticle

  81. Published

    FoxK1splice variants show developmental stage-specific plasticity of expression with temperature in the tiger pufferfish.

    Johnston, I. A., MacKenzie, M. G., Kinghorn, J. R. & Johnston, I. A., 1 Oct 2007, In : Journal of Experimental Biology. 210, p. 3461 - 3472 12 p.

    Research output: Contribution to journalArticle

  82. Published
  83. Published
  84. Published
  85. Published
  86. Published

    Phylogeny and evolution of cee, an ancient gene of unknown function

    Fernandes, J., Macqueen, D. & Johnston, I., Apr 2007, In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 146, 1 p.

    Research output: Contribution to journalArticle

  87. Published

    Profiling of maternal and developmental-stage specific mRNA transcripts in Atlantic halibut Hippoglossus hippoglossus.

    Bai, J., Solberg, C., Fernandes, J. M. O. & Johnston, I. A., 15 Jan 2007, In : Gene. 386, p. 202-210 9 p.

    Research output: Contribution to journalArticle

  88. Published
  89. Published
  90. Published
  91. Published
  92. 2006
  93. Published
  94. Published
  95. Published

    Characterisation and expression of the paired box protein 7 (Pax7) gene in polymorphic Arctic charr (Salvelinus alpinus).

    Sibthorpe, D., Sturlaugsdottir, M. D., Kristjansson, B. J., Thorarensen, H., Skulason, S. & Johnston, I. A., Nov 2006, In : Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology. 145, p. 371-383 13 p.

    Research output: Contribution to journalArticle

  96. Published
  97. Published

    Environment and plasticity of myogenesis in teleost fish

    Johnston, I. A., 15 Jun 2006, In : Journal of Experimental Biology. 209, p. 2249-2264 16 p.

    Research output: Contribution to journalArticle

  98. Published

    Great scallop myostatin - The role as a negative muscle growth regulator also in invertebrates?

    Pagander, H., Strand, O., Magnesen, T., Johnston, I. A. & Andersen, O., Apr 2006, In : Journal of Shellfish Research. 25, p. 298-299 2 p.

    Research output: Contribution to journalArticle

  99. Published

    Insight into the complex genetic network of tetraploid Atlantic salmon (Salmo salar L.): Description of multiple novel Pax -7 splice variants

    Gotensparre, S. M., Anderssen, E., Wargelius, A., Hansen, T. & Johnston, I. A., 24 May 2006, In : Gene. 373, p. 8-15 8 p.

    Research output: Contribution to journalArticle

  100. Published
  101. Published

    Molecular cloning and mRNA expression analysis of carp embryonic, slow and cardiac myosin heavy chain isoforms

    Nihei, Y., Kobiyama, A., Ikeda, D., Ono, Y., Ohara, S., Cole, N. J., Johnston, I. A. & Wantabe, S., Jan 2006, In : Journal of Experimental Biology. 209, p. 188-198 11 p.

    Research output: Contribution to journalArticle

  102. Published

    Muscle and flesh quality traiys in wild and farmed Atlantic salmon

    Johnston, I. A., Li, X., Vieira, V. L. A., Nickell, D., Dingwall, A., Alderson, R., Campbell, P. & Bickerdike, R., 15 Jun 2006, In : Aquaculture. 256, p. 323-336 14 p.

    Research output: Contribution to journalArticle

  103. Published

    Muscle fibre number varies with haemoglobin phenotype in Atlantic cod as predicted by the optimal fibre number hypothesis

    Johnston, I. A., Abercromby, M. & Andersen, O., 22 Dec 2006, In : Biology Letters. 2, 4, p. 590-592 3 p.

    Research output: Contribution to journalArticle

  104. Published

    Myogenin in model pufferfish species: Comparative genomic analysis and thermal plasticity of expression during early development

    Fernandes, J. M. O., MacKenzie, M. G., Wright, P. A., Steele, S. L., Suzuki, Y., Kinghorn, J. R. & Johnston, I. A., Mar 2006, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 1, 1, p. 35-45 11 p.

    Research output: Contribution to journalArticle

  105. Published

    Polymorphism of the lysyl oxidase gene in relation to muscle collagen cross-link concentration in Atlantic salmon.

    Consuegra, S. & Johnston, I. A., 1 Dec 2006, In : Aquaculture Research. 37, p. 1699-1702 4 p.

    Research output: Contribution to journalArticle

  106. Published

    Sexual dimorphism of fast muscle fibre recruitment in farmed Atlantic halibut (Hippoglossus hippoglossua L.).

    Hagen, O., Solberg, C. & Johnston, I. A., 11 Dec 2006, In : Aquaculture. 261, p. 1222-1229 8 p.

    Research output: Contribution to journalArticle

  107. Published

    Temperature-induced developmental plasticity in ectotherms

    Johnston, I. A. & Wilson, R. S., 2006, Comparative developmental physiology: contributions, tools, and trends . Warburton, S. J., Burggren, W. W., Pelster, B., Reiber, C. L. & Spicer, J. (eds.). Oxford University Press, p. 124-138

    Research output: Chapter in Book/Report/Conference proceedingChapter

  108. 2005
  109. Published

    A genomic approach to reveal novel genes associated with myotube formation in the model teleost, Takifugu rubripes

    Fernandes, J. M. O., Mackenzie, M. G., Elgar, G., Suzuki, Y., Watabe, S., Kinghorn, J. R. & Johnston, I. A., 11 Aug 2005, In : Physiological Genomics. 22, 3, p. 327-338 12 p.

    Research output: Contribution to journalArticle

  110. Published
  111. Published
  112. Published
  113. Published
  114. Published
  115. Published

    Genomics: applications to Antarctic ecosystems

    Peck, L. S., Clark, M. S., Clarke, A., Cockell, C. S., Convey, P., Detrich, H. W., Fraser, K. P. P., Johnston, I. A., Methe, B. A., Murray, A. E., Romisch, K. & Rogers, A. D., Apr 2005, In : Polar Biology. 28, 5, p. 351-365 15 p.

    Research output: Contribution to journalReview article

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